Package: fastbeta 0.5.2
Mikael Jagan
fastbeta: Fast Approximation of Time-Varying Infectious Disease Transmission Rates
A fast method for approximating time-varying infectious disease transmission rates from disease incidence time series and other data, based on a discrete time approximation of an SEIR model, as analyzed in Jagan et al. (2020) <doi:10.1371/journal.pcbi.1008124>.
Authors:
fastbeta_0.5.2.tar.gz
fastbeta_0.5.2.zip(r-4.7-x86_64)fastbeta_0.5.2.zip(r-4.7-arm64)fastbeta_0.5.2.zip(r-4.6-x86_64)fastbeta_0.5.2.zip(r-4.6-arm64)fastbeta_0.5.2.zip(r-4.5-x86_64)
fastbeta_0.5.2.tgz(r-4.6-x86_64)fastbeta_0.5.2.tgz(r-4.6-arm64)fastbeta_0.5.2.tgz(r-4.5-x86_64)fastbeta_0.5.2.tgz(r-4.5-arm64)
fastbeta_0.5.2.tar.gz(r-4.7-arm64)fastbeta_0.5.2.tar.gz(r-4.7-x86_64)fastbeta_0.5.2.tar.gz(r-4.6-arm64)fastbeta_0.5.2.tar.gz(r-4.6-x86_64)
fastbeta_0.5.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fastbeta/json (API)
| # Install 'fastbeta' in R: |
| install.packages('fastbeta', repos = c('https://davidearn.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/davidearn/fastbeta/issues
Last updated from:4736a27564. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 92 | ||
| linux-devel-x86_64 | OK | 115 | ||
| source / vignettes | OK | 173 | ||
| linux-release-arm64 | OK | 118 | ||
| linux-release-x86_64 | OK | 100 | ||
| macos-release-arm64 | OK | 163 | ||
| macos-release-x86_64 | OK | 251 | ||
| macos-oldrel-arm64 | OK | 177 | ||
| macos-oldrel-x86_64 | OK | 337 | ||
| windows-devel-arm64 | OK | 337 | ||
| windows-devel-x86_64 | OK | 118 | ||
| windows-release-arm64 | OK | 338 | ||
| windows-release-x86_64 | OK | 85 | ||
| windows-oldrel-x86_64 | OK | 81 | ||
| wasm-release | OK | 73 |
Exports:cbind.tsdeconvolvefastbetafastbeta.bootstrapfastbeta.matrixptpiseirseir.eeseir.jacobianseir.R0sirsir.aoi
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| R Package 'fastbeta' | fastbeta-package |
| Combine Time Series Objects | cbind.ts |
| Richardson-Lucy Deconvolution | deconvolve |
| Estimate a Time-Varying Infectious Disease Transmission Rate | fastbeta |
| Parametric Bootstrapping | fastbeta.bootstrap |
| Calculate Coefficient Matrix for Iteration Step | fastbeta.matrix |
| Pneumonia and Influenza Mortality in Philadelphia, PA, 1918 | pneumonia |
| Peak to Peak Iteration | ptpi |
| Simulate Infectious Disease Time Series | seir sir |
| Auxiliary Functions for the SEIR Model without Forcing | seir.auxiliary seir.ee seir.jacobian seir.R0 |
| Often Used Simulations | seir.library seir.ts01 seir.ts02 |
| Solve the SIR Equations Structured by Age of Infection | sir.aoi summary.sir.aoi |
| Smallpox Mortality in London, England, 1661-1930 | smallpox |