Package: fastbeta 0.3.1
fastbeta: Fast Approximation of Time-Varying Infectious Disease Transmission Rates
A fast method for approximating time-varying infectious disease transmission rates from disease incidence time series and other data, based on a discrete time approximation of an SEIR model, as analyzed in Jagan et al. (2020) <doi:10.1371/journal.pcbi.1008124>.
Authors:
fastbeta_0.3.1.tar.gz
fastbeta_0.3.1.zip(r-4.5)fastbeta_0.3.1.zip(r-4.4)fastbeta_0.3.1.zip(r-4.3)
fastbeta_0.3.1.tgz(r-4.4-x86_64)fastbeta_0.3.1.tgz(r-4.4-arm64)fastbeta_0.3.1.tgz(r-4.3-x86_64)fastbeta_0.3.1.tgz(r-4.3-arm64)
fastbeta_0.3.1.tar.gz(r-4.5-noble)fastbeta_0.3.1.tar.gz(r-4.4-noble)
fastbeta_0.3.1.tgz(r-4.4-emscripten)fastbeta_0.3.1.tgz(r-4.3-emscripten)
fastbeta.pdf |fastbeta.html✨
fastbeta/json (API)
NEWS
# Install 'fastbeta' in R: |
install.packages('fastbeta', repos = c('https://davidearn.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/davidearn/fastbeta/issues
Last updated 16 hours agofrom:0bb15df835. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 21 2024 |
R-4.5-win-x86_64 | OK | Nov 21 2024 |
R-4.5-linux-x86_64 | OK | Nov 21 2024 |
R-4.4-win-x86_64 | OK | Nov 21 2024 |
R-4.4-mac-x86_64 | OK | Nov 21 2024 |
R-4.4-mac-aarch64 | OK | Nov 21 2024 |
R-4.3-win-x86_64 | OK | Nov 21 2024 |
R-4.3-mac-x86_64 | OK | Nov 21 2024 |
R-4.3-mac-aarch64 | OK | Nov 21 2024 |
Exports:deconvolvefastbetafastbeta.bootstrapfastbeta.matrixptpiseirseir.eeseir.jacobianseir.R0sir
Dependencies:
Readme and manuals
Help Manual
Help page | Topics |
---|---|
R Package 'fastbeta' | fastbeta-package |
Richardson-Lucy Deconvolution | deconvolve |
Estimate a Time-Varying Infectious Disease Transmission Rate | fastbeta |
Parametric Bootstrapping | fastbeta.bootstrap |
Calculate Coefficient Matrix for Iteration Step | fastbeta.matrix |
Peak to Peak Iteration | ptpi |
Simulate Infectious Disease Time Series | seir sir |
Auxiliary Functions for the SEIR Model without Forcing | seir.auxiliary seir.ee seir.jacobian seir.R0 |
Often Used Simulations | seir.library seir.ts01 seir.ts02 |
Smallpox Mortality in London, England, 1661-1930 | smallpox |