{ "_id": "6a260974794753ddbc3e3850", "Package": "fastbeta", "Version": "0.5.2", "Date": "2026-06-07", "Title": "Fast Approximation of Time-Varying Infectious Disease\nTransmission Rates", "Description": "A fast method for approximating time-varying infectious\ndisease transmission rates from disease incidence time series\nand other data, based on a discrete time approximation of an\nSEIR model, as analyzed in Jagan et al. (2020)\n.", "License": "GPL (>= 2)", "URL": "https://github.com/davidearn/fastbeta", "BugReports": "https://github.com/davidearn/fastbeta/issues", "Authors@R": "c(person(\"Mikael\", \"Jagan\",\nemail = \"jaganmn@mcmaster.ca\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3542-2938\")),\nperson(\"David\", \"Earn\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-3597-617X\")))", "BuildResaveData": "no", "Repository": "https://davidearn.r-universe.dev", "Date/Publication": "2026-06-07 23:11:22 UTC", "RemoteUrl": "https://github.com/davidearn/fastbeta", "RemoteRef": "HEAD", "RemoteSha": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-08 00:09:29 UTC", "User": "root" }, "Author": "Mikael Jagan [aut, cre] (ORCID:\n),\nDavid Earn [ctb] (ORCID: )", "Maintainer": "Mikael Jagan ", "MD5sum": "7777fd0d820017f253686bbc306e9103", "_user": "davidearn", "_type": "src", "_file": "fastbeta_0.5.2.tar.gz", "_fileid": "f6b20cc795fd61c810d75fbaec1f4d5919b3b1fc92481e5044c424f409a763b4", "_filesize": 387915, "_sha256": "f6b20cc795fd61c810d75fbaec1f4d5919b3b1fc92481e5044c424f409a763b4", "_created": "2026-06-08T00:09:29.000Z", "_published": "2026-06-08T00:14:44.511Z", "_distro": "noble", "_jobs": [ { "job": 80003163499, "time": 107, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7469318630" }, { "job": 80003163504, "time": 114, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7469319221" }, { "job": 80003163512, "time": 120, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7469320195" }, { "job": 80003163491, "time": 140, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7469322111" }, { "job": 80003163502, "time": 108, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7469318319" }, { "job": 80003163474, "time": 220, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7469332644" }, { "job": 80003163486, "time": 88, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7469315987" }, { "job": 80003163485, "time": 272, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7469339170" }, { "job": 80002951836, "time": 182, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7469305095" }, { "job": 80003163484, "time": 80, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7469315297" }, { "job": 80003163492, "time": 88, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7469316065" }, { "job": 80003163509, "time": 90, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7469316375" }, { "job": 80003163488, "time": 90, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7469316294" } ], "_buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/davidearn/fastbeta", "_commit": { "id": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "author": "Mikael Jagan ", "committer": "Mikael Jagan ", "message": "support solution backward in time\n", "time": 1780873882 }, "_maintainer": { "name": "Mikael Jagan", "email": "jaganmn@mcmaster.ca", "login": "jaganmn", "mastodon": "@jaganmn@fosstodon.org", "description": "Research software engineer and R Core Team member", "uuid": 28061575, "orcid": "0000-0002-3542-2938" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3", "role": "Depends" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "adaptivetau", "role": "Suggests" }, { "package": "deSolve", "role": "Suggests" }, { "package": "utils", "role": "Suggests" } ], "_owner": "davidearn", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-23", "n": 2 }, { "week": "2025-27", "n": 6 }, { "week": "2025-28", "n": 5 }, { "week": "2025-29", "n": 1 }, { "week": "2025-32", "n": 2 }, { "week": "2025-33", "n": 3 }, { "week": "2025-34", "n": 2 }, { "week": "2025-42", "n": 7 }, { "week": "2025-43", "n": 2 }, { "week": "2025-46", "n": 5 }, { "week": "2026-23", "n": 11 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "jaganmn", "count": 410, "uuid": 28061575 }, { "user": "davidearn", "count": 1, "uuid": 14253223 } ], "_userbio": { "uuid": 14253223, "type": "user", "name": "David Earn" }, "_downloads": { "count": 144, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fastbeta" }, "_devurl": "https://github.com/davidearn/fastbeta", "_searchresults": 6, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/fastbeta.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/davidearn/fastbeta", "_realowner": "davidearn", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2023-08-28" }, { "version": "0.1.1", "date": "2023-11-28" }, { "version": "0.2.0", "date": "2023-12-12" }, { "version": "0.3.0", "date": "2024-05-18" }, { "version": "0.3.1", "date": "2024-11-22" }, { "version": "0.3.2", "date": "2025-03-24" }, { "version": "0.4.0", "date": "2025-04-28" }, { "version": "0.5.0", "date": "2025-10-15" }, { "version": "0.5.1", "date": "2025-10-26" } ], "_exports": [ "cbind.ts", "deconvolve", "fastbeta", "fastbeta.bootstrap", "fastbeta.matrix", "ptpi", "seir", "seir.ee", "seir.jacobian", "seir.R0", "sir", "sir.aoi" ], "_datasets": [ { "name": "pneumonia", "title": "Pneumonia and Influenza Mortality in Philadelphia, PA, 1918", "object": "pneumonia", "file": "pneumonia.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "seir.ts01", "title": "Often Used Simulations", "object": "seir.ts01", "file": "seir.ts01.R", "class": [ "mts", "ts", "matrix", "array" ], "fields": [ "S", "E", "I", "R", "Z", "B", "Z.obs" ], "rows": 261, "table": true, "tojson": true }, { "name": "seir.ts02", "title": "Often Used Simulations", "object": "seir.ts02", "file": "seir.ts02.R", "class": [ "mts", "ts", "matrix", "array" ], "fields": [ "S", "E", "I", "R", "Z", "B", "Z.obs" ], "rows": 261, "table": true, "tojson": true }, { "name": "smallpox", "title": "Smallpox Mortality in London, England, 1661-1930", "object": "smallpox", "file": "smallpox.rda", "class": [ "data.frame" ], "fields": [ "from", "nday", "smallpox", "allcauses", "births" ], "rows": 13923, "table": true, "tojson": false } ], "_help": [ { "page": "fastbeta-package", "title": "R Package 'fastbeta'", "topics": [ "fastbeta-package" ] }, { "page": "cbind.ts", "title": "Combine Time Series Objects", "topics": [ "cbind.ts" ] }, { "page": "deconvolve", "title": "Richardson-Lucy Deconvolution", "topics": [ "deconvolve" ] }, { "page": "fastbeta", "title": "Estimate a Time-Varying Infectious Disease Transmission Rate", "topics": [ "fastbeta" ] }, { "page": "fastbeta.bootstrap", "title": "Parametric Bootstrapping", "topics": [ "fastbeta.bootstrap" ] }, { "page": "fastbeta.matrix", "title": "Calculate Coefficient Matrix for Iteration Step", "topics": [ "fastbeta.matrix" ] }, { "page": "pneumonia", "title": "Pneumonia and Influenza Mortality in Philadelphia, PA, 1918", "topics": [ "pneumonia" ] }, { "page": "ptpi", "title": "Peak to Peak Iteration", "topics": [ "ptpi" ] }, { "page": "seir", "title": "Simulate Infectious Disease Time Series", "topics": [ "seir", "sir" ] }, { "page": "seir.auxiliary", "title": "Auxiliary Functions for the SEIR Model without Forcing", "topics": [ "seir.auxiliary", "seir.ee", "seir.jacobian", "seir.R0" ] }, { "page": "seir.library", "title": "Often Used Simulations", "topics": [ "seir.library", "seir.ts01", "seir.ts02" ] }, { "page": "sir.aoi", "title": "Solve the SIR Equations Structured by Age of Infection", "topics": [ "sir.aoi", "summary.sir.aoi" ] }, { "page": "smallpox", "title": "Smallpox Mortality in London, England, 1661-1930", "topics": [ "smallpox" ] } ], "_readme": "https://github.com/davidearn/fastbeta/raw/HEAD/README.md", "_rundeps": [], "_score": 3.7403626894942437, "_indexed": true, "_nocasepkg": "fastbeta", "_universes": [ "davidearn", "jaganmn" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.5.2", "date": "2026-06-08T00:11:20.000Z", "distro": "noble", "arch": "aarch64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "5cca1cbb353444c7464931191799afe19a66ee802926442c4ac71195d7dead3a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.7.0", "os": "linux", "version": "0.5.2", "date": "2026-06-08T00:11:20.000Z", "distro": "noble", "arch": "x86_64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "5cdd2718f64a6a42eb28e3855f74fc26de25a8e2e10de728eb3456a27835004e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.6.0", "os": "linux", "version": "0.5.2", "date": "2026-06-08T00:11:32.000Z", "distro": "noble", "arch": "aarch64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "b45ac233f473f0576b066782521640e571de07309042c8622d73bc79add1d1d1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.6.0", "os": "linux", "version": "0.5.2", "date": "2026-06-08T00:11:44.000Z", "distro": "noble", "arch": "x86_64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "41403236cd7f62316ea4062bcc4d02f71fe9a48da34484d96fe3ce7085929bcc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.5.3", "os": "mac", "version": "0.5.2", "date": "2026-06-08T00:11:15.000Z", "arch": "aarch64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "60d62a6cec6884608d84798e40edfbee3baf933918b2086e3608237ca3ecc6bb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.5.3", "os": "mac", "version": "0.5.2", "date": "2026-06-08T00:12:22.000Z", "arch": "x86_64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "64e89e58bd66e6ce1ab214e390e03e1ef2d3e765c8258b4317a5bfa8e71ec7bb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.6.0", "os": "mac", "version": "0.5.2", "date": "2026-06-08T00:10:58.000Z", "arch": "aarch64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "154f699583cbb11d17dc3d5f4cda513a1091f4d70cb0d8d30c920a790f10ef2b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.6.0", "os": "mac", "version": "0.5.2", "date": "2026-06-08T00:13:14.000Z", "arch": "x86_64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "64a1d24930fd604582b3e43dc89231c24f5e74fa3d85bcdc5c5998c59bd5542a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.6.0", "os": "wasm", "version": "0.5.2", "date": "2026-06-08T00:11:12.000Z", "arch": "emscripten", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "c0c239f09083a9dd7b6f7802624b5a33434a495be3b3ff3bb74d33163f78390d", "status": "success", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.7.0", "os": "win", "version": "0.5.2", "date": "2026-06-08T00:10:39.000Z", "arch": "x86_64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "82394040d6ad757db9aa9e0cacf2ee3cd8af54238bec193830696500caae8b3b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.5.3", "os": "win", "version": "0.5.2", "date": "2026-06-08T00:10:41.000Z", "arch": "x86_64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "477d4c69fd8ef8a297b316615c7d9506dd499c5c32f5d523784a19b4d8821120", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" }, { "r": "4.6.0", "os": "win", "version": "0.5.2", "date": "2026-06-08T00:10:40.000Z", "arch": "x86_64", "commit": "4736a27564e07a6d88ed904efc1c364d5dd89bfa", "fileid": "1b472412a36d8351b9e9796ca85ecec7ea0ca39d2d3c78c473bace68e2f6dbf3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/davidearn/actions/runs/27108916644" } ] }